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- __builtin__.object
-
- MatrixViewer
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- DenseMatrixViewer
- summon.SummonMenu(summon.Menu)
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- MatrixMenu
- summon.util.Dict(__builtin__.dict)
-
- Matrix
class DenseMatrixViewer(MatrixViewer) |
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Matrix visualization specifically for dense matrices stored as a
list of lists
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- Method resolution order:
- DenseMatrixViewer
- MatrixViewer
- __builtin__.object
Methods defined here:
- __init__(self, data, colormap=None, rlabels=None, clabels=None, cutoff=-inf, rperm=None, cperm=None, rpart=None, cpart=None, style='quads', **options)
- setDenseMatrix(self, data, colormap=None, rlabels=None, clabels=None, cutoff=-inf, rperm=None, cperm=None, rpart=None, cpart=None)
- sets a new dense matrix to visualize
Methods inherited from MatrixViewer:
- closeLabelWindows(self)
- close down label windows
- closeTreeWindows(self)
- close down tree windows
- drawBorder(self, nrows, ncols)
- draws the matrix boarder
- drawLabels(self)
- draws matrix labels
- drawMatrix(self, mat, mouseClick=None)
- drawPartitions(self, mat)
- draws cluster partitions
- onClick(self, row, col, i, j, val)
- default callback for mouse clicks
- openLabelWindows(self)
- startup label windows
- openTreeWindows(self)
- startup tree windows
- redraw(self)
- setLabelWindows(self, show=True)
- sets whether label windows are visible
- setMatrix(self, mat)
- setTreeWindows(self, show=True)
- sets whether tree windows are visible
- show(self)
- shows the visualization window
- toggleLabelWindows(self)
- rotates through (no labels, inline, and panels)
- togglePartitions(self, enabled=None)
- toggles the drawing of partition lines
- toggleTreeWindows(self)
- toggle tree windows
Data and other attributes inherited from MatrixViewer:
- __dict__ = <dictproxy object>
- dictionary for instance variables (if defined)
- __weakref__ = <attribute '__weakref__' of 'MatrixViewer' objects>
- list of weak references to the object (if defined)
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class Matrix(summon.util.Dict) |
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- Method resolution order:
- Matrix
- summon.util.Dict
- __builtin__.dict
- __builtin__.object
Methods defined here:
- __init__(self)
- from2DList = from_dmat(self, mat, cutoff=-inf)
- from_dmat(self, mat, cutoff=-inf)
- Initialize matrix from a 2D list
- setup(self, nrows=None, ncols=None, nnz=None, rowsample=False, colsample=False)
- submatrix(self, rows=None, cols=None)
- Returns a submatrix
Methods inherited from summon.util.Dict:
- __getitem__(self, i)
- has_keys(self, *keys)
- write(self, out=<open file '<stdout>', mode 'w'>)
Data and other attributes inherited from summon.util.Dict:
- __dict__ = <dictproxy object>
- dictionary for instance variables (if defined)
- __weakref__ = <attribute '__weakref__' of 'Dict' objects>
- list of weak references to the object (if defined)
Methods inherited from __builtin__.dict:
- __cmp__(...)
- x.__cmp__(y) <==> cmp(x,y)
- __contains__(...)
- D.__contains__(k) -> True if D has a key k, else False
- __delitem__(...)
- x.__delitem__(y) <==> del x[y]
- __eq__(...)
- x.__eq__(y) <==> x==y
- __ge__(...)
- x.__ge__(y) <==> x>=y
- __getattribute__(...)
- x.__getattribute__('name') <==> x.name
- __gt__(...)
- x.__gt__(y) <==> x>y
- __hash__(...)
- x.__hash__() <==> hash(x)
- __iter__(...)
- x.__iter__() <==> iter(x)
- __le__(...)
- x.__le__(y) <==> x<=y
- __len__(...)
- x.__len__() <==> len(x)
- __lt__(...)
- x.__lt__(y) <==> x<y
- __ne__(...)
- x.__ne__(y) <==> x!=y
- __repr__(...)
- x.__repr__() <==> repr(x)
- __setitem__(...)
- x.__setitem__(i, y) <==> x[i]=y
- clear(...)
- D.clear() -> None. Remove all items from D.
- copy(...)
- D.copy() -> a shallow copy of D
- get(...)
- D.get(k[,d]) -> D[k] if k in D, else d. d defaults to None.
- has_key(...)
- D.has_key(k) -> True if D has a key k, else False
- items(...)
- D.items() -> list of D's (key, value) pairs, as 2-tuples
- iteritems(...)
- D.iteritems() -> an iterator over the (key, value) items of D
- iterkeys(...)
- D.iterkeys() -> an iterator over the keys of D
- itervalues(...)
- D.itervalues() -> an iterator over the values of D
- keys(...)
- D.keys() -> list of D's keys
- pop(...)
- D.pop(k[,d]) -> v, remove specified key and return the corresponding value
If key is not found, d is returned if given, otherwise KeyError is raised
- popitem(...)
- D.popitem() -> (k, v), remove and return some (key, value) pair as a
2-tuple; but raise KeyError if D is empty
- setdefault(...)
- D.setdefault(k[,d]) -> D.get(k,d), also set D[k]=d if k not in D
- update(...)
- D.update(E, **F) -> None. Update D from E and F: for k in E: D[k] = E[k]
(if E has keys else: for (k, v) in E: D[k] = v) then: for k in F: D[k] = F[k]
- values(...)
- D.values() -> list of D's values
Data and other attributes inherited from __builtin__.dict:
- __new__ = <built-in method __new__ of type object>
- T.__new__(S, ...) -> a new object with type S, a subtype of T
- fromkeys = <built-in method fromkeys of type object>
- dict.fromkeys(S[,v]) -> New dict with keys from S and values equal to v.
v defaults to None.
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class MatrixMenu(summon.SummonMenu) |
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summatrix popup menu
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- Method resolution order:
- MatrixMenu
- summon.SummonMenu
- summon.Menu
- __builtin__.object
Methods defined here:
- __init__(self, viewer)
Methods inherited from summon.Menu:
- add_entry(self, text, func)
- add_item(self, item)
- add_submenu(self, text, submenu)
- add_toggle(self, text, func, state=False)
- clear(self)
- clears all menu items
- delete(self)
- delete all the resources of the menu
- get_item(self, index)
- insert_entry(self, index, text, func)
- insert_item(self, index, item)
- insert_submenu(self, index, text, submenu)
- remove(self, index)
- removes a menu item at position 'index'
- set_entry(self, index, text, func)
- set_item(self, index, item)
- set_submenu(self, index, text, submenu)
Data and other attributes inherited from summon.Menu:
- __dict__ = <dictproxy object>
- dictionary for instance variables (if defined)
- __weakref__ = <attribute '__weakref__' of 'Menu' objects>
- list of weak references to the object (if defined)
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class MatrixViewer(__builtin__.object) |
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Base class for Matrix Visualizations
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Methods defined here:
- __init__(self, mat=None, onClick=None, bgcolor=(0, 0, 0), drawzeros=False, style='points', showLabels=False, showLabelWindows=False, winsize=(400, 400), title='summatrix', rtree=None, ctree=None, useTreeLens=(False, False), showTreeWindows=None)
- closeLabelWindows(self)
- close down label windows
- closeTreeWindows(self)
- close down tree windows
- drawBorder(self, nrows, ncols)
- draws the matrix boarder
- drawLabels(self)
- draws matrix labels
- drawMatrix(self, mat, mouseClick=None)
- drawPartitions(self, mat)
- draws cluster partitions
- onClick(self, row, col, i, j, val)
- default callback for mouse clicks
- openLabelWindows(self)
- startup label windows
- openTreeWindows(self)
- startup tree windows
- redraw(self)
- setLabelWindows(self, show=True)
- sets whether label windows are visible
- setMatrix(self, mat)
- setTreeWindows(self, show=True)
- sets whether tree windows are visible
- show(self)
- shows the visualization window
- toggleLabelWindows(self)
- rotates through (no labels, inline, and panels)
- togglePartitions(self, enabled=None)
- toggles the drawing of partition lines
- toggleTreeWindows(self)
- toggle tree windows
Data and other attributes defined here:
- __dict__ = <dictproxy object>
- dictionary for instance variables (if defined)
- __weakref__ = <attribute '__weakref__' of 'MatrixViewer' objects>
- list of weak references to the object (if defined)
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